Honors Theses

Publication Date

4-2022

Abstract

All eukaryotic cells require that transcribed mRNAs undergo export form the nucleus to the cytoplasm where they can be translated into proteins. This process requires a host of proteins which are conserved between the unicellular budding yeast, S. cerevisiae, and humans. During this process, Mex67 and other associated proteins facilitate the mRNA to travel across the nuclear pore complex (NPC), doorways embedded in the nuclear envelope. Upon the exit of mRNA, Mex67 is released and recycled back into the nucleus to facilitate the export of more mRNA. This occurs through the action of Dbp5, whose activity is regulated through additional proteins, Gle1, Nup42, and Ipk1. In the absence of Nup42 and Ipk1 (nup42∆ipk1∆ mutants), mRNA export cannot occur at high temperatures, leading to a growth defect. Previous studies have shown that overexpression of Bop3, a nonessential protein, can rescue this growth defect. However, Bop3 is not widely studied, and its function is not known. Bioinformatic analysis has uncovered several high confidence sites of post translational modification (PTM): two sites of phosphorylation and two sites of SUMOylation. Following translation, proteins can have additional chemical groups or small proteins covalently attached (PTMs) which regulate protein function. I hypothesize that the putative sites of PTM in Bop3 may have a role in regulating mRNA export. To test the hypothesis, these sites were altered using PCR mutagenesis to inhibit or mimic the PTM function in a BOP3 plasmid. The resulting collection of wild-type and mutant plasmids were then transformed into a mutant yeast strain to assess the resulting functionality of the altered Bop3 protein. I observed growth of Bop3 mutants overexpressed in nup42∆ipk1∆ mutants. From this, the S231A mutant was found not to rescue the temperature sensitive growth defect. I then identified and analyzed Bop3 orthologues for evolutionary conservation, and S231 was found to be conserved. This suggests that maintaining the phosphorylation of this residue is important for Bop3 function. Further research may aim to discover what kinases phosphorylate this site and uncovering how Bop3 functions during the mRNA export process.

Faculty Advisor

Dr. Rebecca Adams

Document Type

Honors Thesis

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